# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not use this file except in compliance # with the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, # software distributed under the License is distributed on an # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY # KIND, either express or implied. See the License for the # specific language governing permissions and limitations # under the License. # Not all types round trip via CSV 100% identical by default tbl <- example_data[, c("dbl", "lgl", "false", "chr")] tbl_no_dates <- tbl # Add a date to test its parsing tbl$date <- Sys.Date() + 1:10 csv_file <- tempfile() test_that("Can read csv file", { tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) tab0 <- Table$create(tbl) tab1 <- read_csv_arrow(tf, as_data_frame = FALSE) expect_equal(tab0, tab1) tab2 <- read_csv_arrow(mmap_open(tf), as_data_frame = FALSE) expect_equal(tab0, tab2) tab3 <- read_csv_arrow(ReadableFile$create(tf), as_data_frame = FALSE) expect_equal(tab0, tab3) }) test_that("read_csv_arrow(as_data_frame=TRUE)", { tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) tab1 <- read_csv_arrow(tf, as_data_frame = TRUE) expect_equal(tbl, tab1) }) test_that("read_delim_arrow parsing options: delim", { tf <- tempfile() on.exit(unlink(tf)) write.table(tbl, tf, sep = "\t", row.names = FALSE) tab1 <- read_tsv_arrow(tf) tab2 <- read_delim_arrow(tf, delim = "\t") expect_equal(tab1, tab2) expect_equal(tbl, tab1) }) test_that("read_delim_arrow parsing options: quote", { tf <- tempfile() on.exit(unlink(tf)) df <- data.frame(a = c(1, 2), b = c("'abc'", "'def'")) write.table(df, sep = ";", tf, row.names = FALSE, quote = FALSE) tab1 <- read_delim_arrow(tf, delim = ";", quote = "'") # Is this a problem? # Component “a”: target is integer64, current is numeric tab1$a <- as.numeric(tab1$a) expect_equal( tab1, tibble::tibble(a = c(1, 2), b = c("abc", "def")) ) }) test_that("read_csv_arrow parsing options: col_names", { tf <- tempfile() on.exit(unlink(tf)) # Writing the CSV without the header write.table(tbl, tf, sep = ",", row.names = FALSE, col.names = FALSE) # Reading with col_names = FALSE autogenerates names no_names <- read_csv_arrow(tf, col_names = FALSE) expect_equal(no_names$f0, tbl[[1]]) tab1 <- read_csv_arrow(tf, col_names = names(tbl)) expect_identical(names(tab1), names(tbl)) expect_equal(tbl, tab1) # This errors (correctly) because I haven't given enough names # but the error message is "Invalid: Empty CSV file", which is not accurate expect_error( read_csv_arrow(tf, col_names = names(tbl)[1]) ) # Same here expect_error( read_csv_arrow(tf, col_names = c(names(tbl), names(tbl))) ) }) test_that("read_csv_arrow parsing options: skip", { tf <- tempfile() on.exit(unlink(tf)) # Adding two garbage lines to start the csv cat("asdf\nqwer\n", file = tf) suppressWarnings(write.table(tbl, tf, sep = ",", row.names = FALSE, append = TRUE)) tab1 <- read_csv_arrow(tf, skip = 2) expect_identical(names(tab1), names(tbl)) expect_equal(tbl, tab1) }) test_that("read_csv_arrow parsing options: skip_empty_rows", { tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) cat("\n\n", file = tf, append = TRUE) tab1 <- read_csv_arrow(tf, skip_empty_rows = FALSE) expect_equal(nrow(tab1), nrow(tbl) + 2) expect_true(is.na(tail(tab1, 1)[[1]])) }) test_that("read_csv_arrow parsing options: na strings", { tf <- tempfile() on.exit(unlink(tf)) df <- data.frame( a = c(1.2, NA, NA, 3.4), b = c(NA, "B", "C", NA), stringsAsFactors = FALSE ) write.csv(df, tf, row.names = FALSE) expect_equal(grep("NA", readLines(tf)), 2:5) tab1 <- read_csv_arrow(tf) expect_equal(is.na(tab1$a), is.na(df$a)) expect_equal(is.na(tab1$b), is.na(df$b)) unlink(tf) # Delete and write to the same file name again write.csv(df, tf, row.names = FALSE, na = "asdf") expect_equal(grep("asdf", readLines(tf)), 2:5) tab2 <- read_csv_arrow(tf, na = "asdf") expect_equal(is.na(tab2$a), is.na(df$a)) expect_equal(is.na(tab2$b), is.na(df$b)) }) test_that("read_csv_arrow() respects col_select", { tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE, quote = FALSE) tab <- read_csv_arrow(tf, col_select = ends_with("l"), as_data_frame = FALSE) expect_equal(tab, Table$create(example_data[, c("dbl", "lgl")])) tib <- read_csv_arrow(tf, col_select = ends_with("l"), as_data_frame = TRUE) expect_equal(tib, example_data[, c("dbl", "lgl")]) }) test_that("read_csv_arrow() can detect compression from file name", { skip_if_not_available("gzip") tf <- tempfile(fileext = ".csv.gz") on.exit(unlink(tf)) write.csv(tbl, gzfile(tf), row.names = FALSE, quote = FALSE) tab1 <- read_csv_arrow(tf) expect_equal(tbl, tab1) }) test_that("read_csv_arrow(schema=)", { tbl <- example_data[, "int"] tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow(tf, schema = schema(int = float64()), skip = 1) expect_identical(df, tibble::tibble(int = as.numeric(tbl$int))) }) test_that("read_csv_arrow(col_types = )", { tbl <- example_data[, "int"] tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow(tf, col_types = schema(int = float64())) expect_identical(df, tibble::tibble(int = as.numeric(tbl$int))) }) test_that("read_csv_arrow(col_types=string, col_names)", { tbl <- example_data[, "int"] tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow(tf, col_names = "int", col_types = "d", skip = 1) expect_identical(df, tibble::tibble(int = as.numeric(tbl$int))) expect_error(read_csv_arrow(tf, col_types = c("i", "d"))) expect_error(read_csv_arrow(tf, col_types = "d")) expect_error(read_csv_arrow(tf, col_types = "i", col_names = c("a", "b"))) expect_error(read_csv_arrow(tf, col_types = "y", col_names = "a")) }) test_that("read_csv_arrow() can read timestamps", { tbl <- tibble::tibble(time = as.POSIXct("2020-07-20 16:20", tz = "UTC")) tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow(tf, col_types = schema(time = timestamp(timezone = "UTC"))) expect_equal(tbl, df) # time zones are being read in as time zone-naive, hence ignore_attr = "tzone" df <- read_csv_arrow(tf, col_types = "T", col_names = "time", skip = 1) expect_equal(tbl, df, ignore_attr = "tzone") }) test_that("read_csv_arrow(timestamp_parsers=)", { tf <- tempfile() on.exit(unlink(tf)) tbl <- tibble::tibble(time = "23/09/2020") write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow( tf, col_types = schema(time = timestamp(timezone = "UTC")), timestamp_parsers = "%d/%m/%Y" ) expect_equal(df$time, as.POSIXct(tbl$time, format = "%d/%m/%Y", tz = "UTC")) }) test_that("Skipping columns with null()", { tf <- tempfile() on.exit(unlink(tf)) cols <- c("dbl", "lgl", "false", "chr") tbl <- example_data[, cols] write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow(tf, col_types = "d-_c", col_names = cols, skip = 1) expect_identical(df, tbl[, c("dbl", "chr")]) }) test_that("Mix of guessing and declaring types", { tf <- tempfile() on.exit(unlink(tf)) cols <- c("dbl", "lgl", "false", "chr") tbl <- example_data[, cols] write.csv(tbl, tf, row.names = FALSE) tab <- read_csv_arrow(tf, col_types = schema(dbl = float32()), as_data_frame = FALSE) expect_equal(tab$schema, schema(dbl = float32(), lgl = bool(), false = bool(), chr = utf8())) df <- read_csv_arrow(tf, col_types = "d-?c", col_names = cols, skip = 1) expect_identical(df, tbl[, c("dbl", "false", "chr")]) }) test_that("Write a CSV file with header", { tbl_out <- write_csv_arrow(tbl_no_dates, csv_file) expect_true(file.exists(csv_file)) expect_identical(tbl_out, tbl_no_dates) tbl_in <- read_csv_arrow(csv_file) expect_identical(tbl_in, tbl_no_dates) tbl_out <- write_csv_arrow(tbl, csv_file) expect_true(file.exists(csv_file)) expect_identical(tbl_out, tbl) tbl_in <- read_csv_arrow(csv_file) expect_identical(tbl_in, tbl) }) test_that("Write a CSV file with no header", { tbl_out <- write_csv_arrow(tbl_no_dates, csv_file, include_header = FALSE) expect_true(file.exists(csv_file)) expect_identical(tbl_out, tbl_no_dates) tbl_in <- read_csv_arrow(csv_file, col_names = FALSE) tbl_expected <- tbl_no_dates names(tbl_expected) <- c("f0", "f1", "f2", "f3") expect_identical(tbl_in, tbl_expected) }) test_that("Write a CSV file with different batch sizes", { tbl_out1 <- write_csv_arrow(tbl_no_dates, csv_file, batch_size = 1) expect_true(file.exists(csv_file)) expect_identical(tbl_out1, tbl_no_dates) tbl_in1 <- read_csv_arrow(csv_file) expect_identical(tbl_in1, tbl_no_dates) tbl_out2 <- write_csv_arrow(tbl_no_dates, csv_file, batch_size = 2) expect_true(file.exists(csv_file)) expect_identical(tbl_out2, tbl_no_dates) tbl_in2 <- read_csv_arrow(csv_file) expect_identical(tbl_in2, tbl_no_dates) tbl_out3 <- write_csv_arrow(tbl_no_dates, csv_file, batch_size = 12) expect_true(file.exists(csv_file)) expect_identical(tbl_out3, tbl_no_dates) tbl_in3 <- read_csv_arrow(csv_file) expect_identical(tbl_in3, tbl_no_dates) }) test_that("Write a CSV file with invalid input type", { bad_input <- Array$create(1:5) expect_error( write_csv_arrow(bad_input, csv_file), regexp = "x must be an object of class 'data.frame', 'RecordBatch', or 'Table', not 'Array'." ) }) test_that("Write a CSV file with invalid batch size", { expect_error( write_csv_arrow(tbl_no_dates, csv_file, batch_size = -1), regexp = "batch_size not greater than 0" ) }) test_that("time mapping work as expected (ARROW-13624)", { tbl <- tibble::tibble( dt = as.POSIXct(c("2020-07-20 16:20", NA), tz = "UTC"), time = c(hms::as_hms("16:20:00"), NA) ) tf <- tempfile() on.exit(unlink(tf)) write.csv(tbl, tf, row.names = FALSE) df <- read_csv_arrow(tf, col_names = c("dt", "time"), col_types = "Tt", skip = 1 ) expect_error( read_csv_arrow(tf, col_names = c("dt", "time"), col_types = "tT", skip = 1 ) ) expect_equal(df, tbl, ignore_attr = "tzone") })