System.out.println("Please use the FrameworkWizard to add this MSA file to the package.");\r
System.exit(FAIL);\r
}\r
- path2Msa = Cwd.replace(path2Spd, "");\r
- path2Msa = path2Msa + "/" + msaFn;\r
+ if (path2Spd.equals(Cwd + "/")) \r
+ {\r
+ // .msa file and .spd in the same directory\r
+ path2Msa = msaFn;\r
+ } \r
+ else \r
+ {\r
+ path2Msa = Cwd.replace(path2Spd, "");\r
+ path2Msa = path2Msa + "/" + msaFn;\r
+ }\r
+\r
return path2Msa;\r
}\r
\r