ceph/src/arrow/ci/scripts/r_docker_configure.sh

   1 #!/usr/bin/env bash
   2 # Licensed to the Apache Software Foundation (ASF) under one
   3 # or more contributor license agreements.  See the NOTICE file
   4 # distributed with this work for additional information
   5 # regarding copyright ownership.  The ASF licenses this file
   6 # to you under the Apache License, Version 2.0 (the
   7 # "License"); you may not use this file except in compliance
   8 # with the License.  You may obtain a copy of the License at
   9 #
  10 #   http://www.apache.org/licenses/LICENSE-2.0
  11 #
  12 # Unless required by applicable law or agreed to in writing,
  13 # software distributed under the License is distributed on an
  14 # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
  15 # KIND, either express or implied.  See the License for the
  16 # specific language governing permissions and limitations
  17 # under the License.
  18
  19 set -ex
  20
  21 : ${R_BIN:=R}
  22
  23 # The Dockerfile should have put this file here
  24 if [ -f "/arrow/ci/etc/rprofile" ]; then
  25   # Ensure parallel R package installation, set CRAN repo mirror,
  26   # and use pre-built binaries where possible
  27   cat /arrow/ci/etc/rprofile >> $(${R_BIN} RHOME)/etc/Rprofile.site
  28 fi
  29
  30 # Ensure parallel compilation of C/C++ code
  31 echo "MAKEFLAGS=-j$(${R_BIN} -s -e 'cat(parallel::detectCores())')" >> $(R RHOME)/etc/Renviron.site
  32
  33 # Special hacking to try to reproduce quirks on fedora-clang-devel on CRAN
  34 # which uses a bespoke clang compiled to use libc++
  35 # https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang
  36 if [ "$RHUB_PLATFORM" = "linux-x86_64-fedora-clang" ]; then
  37   dnf install -y libcxx-devel
  38   sed -i.bak -E -e 's/(CXX1?1? =.*)/\1 -stdlib=libc++/g' $(${R_BIN} RHOME)/etc/Makeconf
  39   rm -rf $(${R_BIN} RHOME)/etc/Makeconf.bak
  40
  41   sed -i.bak -E -e 's/(CXXFLAGS = )(.*)/\1 -g -O3 -Wall -pedantic -frtti -fPIC/' $(${R_BIN} RHOME)/etc/Makeconf
  42   rm -rf $(${R_BIN} RHOME)/etc/Makeconf.bak
  43 fi
  44
  45 # Special hacking to try to reproduce quirks on centos using non-default build
  46 # tooling.
  47 if [[ "$DEVTOOLSET_VERSION" -gt 0 ]]; then
  48   if [ "`which dnf`" ]; then
  49     dnf install -y centos-release-scl
  50     dnf install -y "devtoolset-$DEVTOOLSET_VERSION"
  51   else
  52     yum install -y centos-release-scl
  53     yum install -y "devtoolset-$DEVTOOLSET_VERSION"
  54   fi
  55 fi
  56
  57 # Install openssl for S3 support
  58 if [ "$ARROW_S3" == "ON" ] || [ "$ARROW_R_DEV" == "TRUE" ]; then
  59   if [ "`which dnf`" ]; then
  60     dnf install -y libcurl-devel openssl-devel
  61   elif [ "`which yum`" ]; then
  62     yum install -y libcurl-devel openssl-devel
  63   elif [ "`which zypper`" ]; then
  64     zypper install -y libcurl-devel libopenssl-devel
  65   else
  66     apt-get update
  67     apt-get install -y libcurl4-openssl-dev libssl-dev
  68   fi
  69
  70   # The Dockerfile should have put this file here
  71   if [ -f "/arrow/ci/scripts/install_minio.sh" ] && [ "`which wget`" ]; then
  72     /arrow/ci/scripts/install_minio.sh amd64 linux latest /usr/local
  73   fi
  74
  75   if [ -f "/arrow/ci/scripts/install_gcs_testbench.sh" ] && [ "`which pip`" ]; then
  76     /arrow/ci/scripts/install_gcs_testbench.sh amd64 default
  77   fi
  78 fi
  79
  80 # Workaround for html help install failure; see https://github.com/r-lib/devtools/issues/2084#issuecomment-530912786
  81 Rscript -e 'x <- file.path(R.home("doc"), "html"); if (!file.exists(x)) {dir.create(x, recursive=TRUE); file.copy(system.file("html/R.css", package="stats"), x)}'